PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g13800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 168aa    MW: 18497.8 Da    PI: 10.0383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g13800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-183584355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr+++ +g+++AeIrd + ng   r+++g+f+tae Aa a+++a+ + +g
  Vang06g13800.1 35 FRGVRRRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAAFSTRG 84
                    8*******.**********44465..**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-343498IPR001471AP2/ERF domain
PROSITE profilePS5103222.3133492IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-293593IPR001471AP2/ERF domain
PRINTSPR003673.9E-103546IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-213593IPR016177DNA-binding domain
CDDcd000181.52E-173593No hitNo description
PfamPF008471.2E-123584IPR001471AP2/ERF domain
PRINTSPR003673.9E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
LVSSESQVEV SSNLSDASEG HVVKEAQGPK EKRPFRGVRR RPWGKFAAEI RDSTRNGVRV  60
WIGTFDTAEA AALAYDQAAF STRGSMAVLN FPEEVVRESL KDMPNKPWED GSSPVLALKK  120
KHTMRRKSKA TNKKPKSVLV LEDLGSDYLE QLLSLTSSSS SSDHVFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-273595666ATERF1
2gcc_A3e-273595666ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522685.17e-86PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC85e-53ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0L9TXA88e-90A0A0L9TXA8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SR868e-90A0A0S3SR86_PHAAN; Uncharacterized protein
STRINGGLYMA13G18410.14e-74(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-43ethylene response factor 1